Recent Publications

Chauhan S; Danielson S; Clements V; Edwards N; Ostrand-Rosenberg S; Fenselau C, 2017. Surface Glycoproteins of Exosomes Shed by Myeloid-Derived Suppressor Cells Contribute to Function.  J Proteome Res 16(1):238-246

Patra A; Jarzynski C, 2017. Classical and Quantum Shortcuts to Adiabaticity in a Tilted Piston.  J Phys Chem B 121(15):3403-3411

Reddy GN; Huqi A; Iuga D; Sakurai S; Marsh A; Davis JT; Masiero S; Brown SP, 2017. Co-existence of Distinct Supramolecular Assemblies in Solution and in the Solid State.  Chemistry 23(10):2315-2322

Hansen JN, 2017. Human Subject Effects on Torsion Pendulum Oscillations: Importance of Establishing the Contribution of Thermal Convection Air Currents.  Explore (NY) 13(1):9-10

Yi C; Zhang S; Webb KT; Nie Z, 2017. Anisotropic Self-Assembly of Hairy Inorganic Nanoparticles.  Acc Chem Res 50(1):12-21

Li XN; Ridge CD; Mazzola EP; Sun J; Gutierrez O; Moser A; DiMartino JC; MacDonald SA; Chen P, 2017. Application of a computer-assisted structure elucidation program for the structural determination of a new terpenoid aldehyde with an unusual skeleton.  Magn Reson Chem 55(3):210-213

Huang Z; Raciti D; Yu S; Zhang L; Deng L; He J; Liu Y; Khashab NM; Wang C; Gong J; Nie Z, 2016. Synthesis of Platinum Nanotubes and Nanorings via Simultaneous Metal Alloying and Etching.  J Am Chem Soc 138(20):6332-5

Hickson KM; Loison JC; Lique F; Kłos J, 2016. An Experimental and Theoretical Investigation of the C((1)D) + N2 → C((3)P) + N2 Quenching Reaction at Low Temperature.  J Phys Chem A 120(16):2504-13

Ponce A; Brostoff LB; Gibbons SK; Zavalij P; Viragh C; Hooper J; Alnemrat S; Gaskell KJ; Eichhorn B, 2016. Elucidation of the Fe(III) Gallate Structure in Historical Iron Gall Ink.  Anal Chem 88(10):5152-8

Knorr DB Jr; Tran NT; Gaskell KJ; Orlicki JA; Woicik JC; Jaye C; Fischer DA; Lenhart JL, 2016. Synthesis and Characterization of Aminopropyltriethoxysilane-Polydopamine Coatings.  Langmuir 32(17):4370-81

Dirda ND; Zavalij PY; Kao JP, 2016. Crystal and mol-ecular structure of meso-2,6-di-bromo-hepta-nedioic acid (meso-2,6-di-bromo-pimelic acid).  Acta Crystallogr E Crystallogr Commun 72(Pt 3):322-4

Bonança MV; Jarzynski C, 2016. Conditional reversibility in nonequilibrium stochastic systems.  Phys Rev E 93(2):022101

Kim Y; Edwards N; Fenselau C, 2016. Extracellular vesicle proteomes reflect developmental phases of Bacillus subtilis.  Clin Proteomics 13:6

Davtyan A; Platkov M; Gruebele M; Papoian GA, 2016. Stochastic Resonance in Protein Folding Dynamics.  Chemphyschem 17(9):1305-13

Kłos J; Zhang SG; Meyer H, 2016. The near-IR spectrum of NO(X̃(2)Π)-Ne detected through excitation into the Ã-state continuum: A joint experimental and theoretical study.  J Chem Phys 144(11):114307

Popov K; Komianos J; Papoian GA, 2016. MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks.  PLoS Comput Biol 12(4):e1004877

Lamech LT; Saoji M; Paukstelis PJ; Lambowitz AM, 2016. Structural Divergence of the Group I Intron Binding Surface in Fungal Mitochondrial Tyrosyl-tRNA Synthetases That Function in RNA Splicing.  J Biol Chem 291(22):11911-27

Kłos J; Alexander MH; Kumar P; Poirier B; Jiang B; Guo H, 2016. New ab initio adiabatic potential energy surfaces and bound state calculations for the singlet ground X̃(1)A1 and excited C̃(1)B2(2(1)A(')) states of SO2.  J Chem Phys 144(17):174301

Sun CF; Glaz BJ; Okada M; Baker E 3rd; Cheng XY; Karna SP; Wang Y, 2016. Blocking Oxidation Failures of Carbon Nanotubes through Selective Protection of Defects.  Adv Mater 28(31):6672-9

Choksawangkarn W; Graham LM; Burke M; Lee SB; Ostrand-Rosenberg S; Fenselau C; Edwards NJ, 2016. Peptide-based systems analysis of inflammation induced myeloid-derived suppressor cells reveals diverse signaling pathways.  Proteomics 16(13):1881-8

DeLisio JB; Hu X; Wu T; Egan GC; Young G; Zachariah MR, 2016. Probing the Reaction Mechanism of Aluminum/Poly(vinylidene fluoride) Composites.  J Phys Chem B 120(24):5534-42

Hanna DA; Harvey RM; Martinez-Guzman O; Yuan X; Chandrasekharan B; Raju G; Outten FW; Hamza I; Reddi AR, 2016. Heme dynamics and trafficking factors revealed by genetically encoded fluorescent heme sensors.  Proc Natl Acad Sci U S A 113(27):7539-44

Orek C; Kłos J; Lique F; Bulut N, 2016. Ab initio studies of the Rg-NO(+)(X(1)Σ(+)) van der Waals complexes (Rg = He, Ne, Ar, Kr, and Xe).  J Chem Phys 144(20):204303

Remsing RC; Weeks JD, 2016. Role of Local Response in Ion Solvation: Born Theory and Beyond.  J Phys Chem B 120(26):6238-49

Lu X; Isaacs L, 2016. Uptake of Hydrocarbons in Aqueous Solution by Encapsulation in Acyclic Cucurbit[n]uril-Type Molecular Containers.  Angew Chem Int Ed Engl 55(28):8076-80

Ma X; Wang W; Bittner F; Schmidt N; Berkey R; Zhang L; King H; Zhang Y; Feng J; Wen Y; Tan L; Li Y; Zhang Q; Deng Z; Xiong X; Xiao S, 2016. Dual and Opposing Roles of Xanthine Dehydrogenase in Defense-Associated Reactive Oxygen Species Metabolism in Arabidopsis.  Plant Cell 28(5):1108-26

Raz O; Subaşı Y; Pugatch R, 2016. Geometric Heat Engines Featuring Power that Grows with Efficiency.  Phys Rev Lett 116(16):160601

Thomas TS; Hwang W; Sita LR, 2016. End-Group-Functionalized Poly(α-olefinates) as Non-Polar Building Blocks: Self-Assembly of Sugar-Polyolefin Hybrid Conjugates.  Angew Chem Int Ed Engl 55(15):4683-7

Kwon H; Furmanchuk A; Kim M; Meany B; Guo Y; Schatz GC; Wang Y, 2016. Molecularly Tunable Fluorescent Quantum Defects.  J Am Chem Soc 138(21):6878-85

Wang C; Carter-Cooper B; Du Y; Zhou J; Saeed MA; Liu J; Guo M; Roembke B; Mikek C; Lewis EA; Lapidus RG; Sintim HO, 2016. Alkyne-substituted diminazene as G-quadruplex binders with anticancer activities.  Eur J Med Chem 118:266-75

Leshem B; Xu R; Dallal Y; Miao J; Nadler B; Oron D; Dudovich N; Raz O, 2016. Direct single-shot phase retrieval from the diffraction pattern of separated objects.  Nat Commun 7:10820

Longhini AP; LeBlanc RM; Becette O; Salguero C; Wunderlich CH; Johnson BA; D'Souza VM; Kreutz C; Dayie TK, 2016. Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations.  Nucleic Acids Res 44(6):e52

Li W; Wang K; Zhang P; He J; Xu S; Liao Y; Zhu J; Xie X; Nie Z, 2016. Self-Assembly of Shaped Nanoparticles into Free-Standing 2D and 3D Superlattices.  Small 12(4):499-505

Peters GM; Skala LP; Davis JT, 2016. A Molecular Chaperone for G4-Quartet Hydrogels.  J Am Chem Soc 138(1):134-9

Dave K; Davtyan A; Papoian GA; Gruebele M; Platkov M, 2016. Environmental Fluctuations and Stochastic Resonance in Protein Folding.  Chemphyschem 17(9):1341-8

Huang C; Liu Y; Rokita SE, 2016. Targeting duplex DNA with the reversible reactivity of quinone methides.  Signal Transduct Target Ther 1.

Ganapati S; Zavalij PY; Eikermann M; Isaacs L, 2016. In Vitro selectivity of an acyclic cucurbit[n]uril molecular container towards neuromuscular blocking agents relative to commonly used drugs.  Org Biomol Chem 14(4):1277-87

Siraj N; El-Zahab B; Hamdan S; Karam TE; Haber LH; Li M; Fakayode SO; Das S; Valle B; Strongin RM; Patonay G; Sintim HO; Baker GA; Powe A; Lowry M; Karolin JO; Geddes CD; Warner IM, 2016. Fluorescence, Phosphorescence, and Chemiluminescence.  Anal Chem 88(1):170-202

Tong T; Ondov JM; Buchholz BA; VanDerveer MC, 2016. Contemporary carbon content of bis (2-ethylhexyl) phthalate in butter.  Food Chem 190:1064-1068

Kłos J; Kim M; Alexander MH; Wang Y, 2016. Chemical Control and Spectral Fingerprints of Electronic Coupling in Carbon Nanostructures.  J Phys Chem C Nanomater Interfaces 120(51):29476-29483

Nonomura A; Lorimer G; Holtz B; Vacquier V; Biel KY; Govindjee, 2016. Andrew A. Benson: personal recollections.  Photosynth Res 127(3):369-78

Castañeda CA; Chaturvedi A; Camara CM; Curtis JE; Krueger S; Fushman D, 2016. Linkage-specific conformational ensembles of non-canonical polyubiquitin chains.  Phys Chem Chem Phys 18(8):5771-88

Tsuji G; Sintim HO, 2016. Cyclic dinucleotide detection with riboswitch-G-quadruplex hybrid.  Mol Biosyst 12(3):773-7

Long JW; Wallace JM; Peterson GW; Huynh K, 2016. Manganese Oxide Nanoarchitectures as Broad-Spectrum Sorbents for Toxic Gases.  ACS Appl Mater Interfaces 8(2):1184-93

Kim H; Zep A; Ryu SH; Ahn H; Shin TJ; Lee SB; Pociecha D; Gorecka E; Yoon DK, 2016. Linkage-length dependent structuring behaviour of bent-core molecules in helical nanostructures.  Soft Matter 12(14):3326-30

Castañeda CA; Dixon EK; Walker O; Chaturvedi A; Nakasone MA; Curtis JE; Reed MR; Krueger S; Cropp TA; Fushman D, 2016. Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins.  Structure 24(3):423-36

Kłos J; Alexander MH; Kumar P; Poirier B; Jiang B; Guo H, 2016. Publisher's Note: "New ab initio adiabatic potential energy surfaces and bound state calculations for the singlet ground X̃(1)A1 and excited C̃(1)B2(2(1)A(')) states of SO2" [J. Chem. Phys. 144, 174301 (2016)].  J Chem Phys 144(20):209901

Andrew AA; Del Vecchio R; Zhang Y; Subramaniam A; Blough NV, 2016. Are Extracted Materials Truly Representative of Original Samples? Impact of C18 Extraction on CDOM Optical and Chemical Properties.  Front Chem 4:4

Remsing RC; Liu S; Weeks JD, 2016. Long-ranged contributions to solvation free energies from theory and short-ranged models.  Proc Natl Acad Sci U S A 113(11):2819-26

Chen B; LeBlanc R; Dayie TK, 2016. SAM-II Riboswitch Samples at least Two Conformations in Solution in the Absence of Ligand: Implications for Recognition.  Angew Chem Int Ed Engl 55(8):2724-7

Qiu H; Srinivas HD; Zavalij PY; Doyle MP, 2016. Unprecedented Intramolecular [4 + 2]-Cycloaddition between a 1,3-Diene and a Diazo Ester.  J Am Chem Soc 138(6):1808-11

Anderson DC; Nicely JM; Salawitch RJ; Canty TP; Dickerson RR; Hanisco TF; Wolfe GM; Apel EC; Atlas E; Bannan T; Bauguitte S; Blake NJ; Bresch JF; Campos TL; Carpenter LJ; Cohen MD; Evans M; Fernandez RP; Kahn BH; Kinnison DE; Hall SR; Harris NR; Hornbrook RS; Lamarque JF; Le Breton M; Lee JD; Percival C; Pfister L; Pierce RB; Riemer DD; Saiz-Lopez A; Stunder BJ; Thompson AM; Ullmann K; Vaughan A; Weinheimer AJ, 2016. A pervasive role for biomass burning in tropical high ozone/low water structures.  Nat Commun 7:10267

Sberegaeva AV; Zavalij PY; Vedernikov AN, 2016. Oxidation of a Monomethylpalladium(II) Complex with O2 in Water: Tuning Reaction Selectivity to Form Ethane, Methanol, or Methylhydroperoxide.  J Am Chem Soc 138(4):1446-55

Noked M; Schroeder MA; Pearse AJ; Rubloff GW; Lee SB, 2016. Protocols for Evaluating and Reporting Li-O2 Cell Performance.  J Phys Chem Lett 7(2):211-5

Brinson RG; Miller JT; Kahn JD; Le Grice SF; Marino JP, 2016. Applying Thymine Isostere 2,4-Difluoro-5-Methylbenzene as a NMR Assignment Tool and Probe of Homopyrimidine/Homopurine Tract Structural Dynamics.  Methods Enzymol 566:89-110

Zhu G; Liu Y; Yang X; Kim YH; Zhang H; Jia R; Liao HS; Jin A; Lin J; Aronova M; Leapman R; Nie Z; Niu G; Chen X, 2016. DNA-inorganic hybrid nanovaccine for cancer immunotherapy.  Nanoscale 8(12):6684-92

Lee AE; Geis-Asteggiante L; Dixon EK; Kim Y; Kashyap TR; Wang Y; Fushman D; Fenselau C, 2016. Preparing to read the ubiquitin code: characterization of ubiquitin trimers by top-down mass spectrometry.  J Mass Spectrom 51(4):315-21

Postel S; Deredge D; Bonsor DA; Yu X; Diederichs K; Helmsing S; Vromen A; Friedler A; Hust M; Egelman EH; Beckett D; Wintrode PL; Sundberg EJ, 2016. Bacterial flagellar capping proteins adopt diverse oligomeric states.  Elife 5.

Hsiao PY; Kalin JH; Sun IH; Amin MN; Lo YC; Chiang MJ; Giddens J; Sysa-Shah P; Gabrielson K; Wang LX; Powell JD; Cole PA, 2016. An Fc-Small Molecule Conjugate for Targeted Inhibition of the Adenosine 2A Receptor.  Chembiochem 17(20):1951-1960

Chintapalli SV; Jayanthi S; Mallipeddi PL; Gundampati R; Suresh Kumar TK; van Rossum DB; Anishkin A; Adams SH, 2016. Novel Molecular Interactions of Acylcarnitines and Fatty Acids with Myoglobin.  J Biol Chem 291(48):25133-25143

Duman LM; Farrell WS; Zavalij PY; Sita LR, 2016. Steric Switching from Photochemical to Thermal Reaction Pathways for Enhanced Efficiency in Metal-Mediated Nitrogen Fixation.  J Am Chem Soc 138(45):14856-14859

Beutner V; Zhang SG; Meyer H; Kłos J, 2016. The near-IR spectrum of NO(X̃2Π)-He detected through excitation into the Ã-state continuum: A joint experimental and theoretical study.  J Chem Phys 145(12):124318

Noked M; Liu C; Hu J; Gregorczyk K; Rubloff GW; Lee SB, 2016. Electrochemical Thin Layers in Nanostructures for Energy Storage.  Acc Chem Res 49(10):2336-2346

Sigwalt D; Zavalij PY; Isaacs L, 2016. Cationic acyclic cucurbit[n]uril-type containers: synthesis and molecular recognition toward nucleotides.  Supramol Chem 28(9-10):825-834

Schneck NA; Phinney KW; Lee SB; Lowenthal MS, 2016. Quantification of antibody coupled to magnetic particles by targeted mass spectrometry.  Anal Bioanal Chem 408(29):8325-8332

Huang Y; Dai L; Song L; Zhang L; Rong Y; Zhang J; Nie Z; Chen T, 2016. Engineering Gold Nanoparticles in Compass Shape with Broadly Tunable Plasmon Resonances and High-Performance SERS.  ACS Appl Mater Interfaces.

Hostaš J; Sigwalt D; Šekutor M; Ajani H; Dubecký M; Řezáč J; Zavalij PY; Cao L; Wohlschlager C; Mlinarić-Majerski K; Isaacs L; Glaser R; Hobza P, 2016. A Nexus between Theory and Experiment: Non-Empirical Quantum Mechanical Computational Methodology Applied to Cucurbit[n]uril⋅Guest Binding Interactions.  Chemistry 22(48):17226-17238

LaKind JS; Overpeck J; Breysse PN; Backer L; Richardson SD; Sobus J; Sapkota A; Upperman CR; Jiang C; Beard CB; Brunkard JM; Bell JE; Harris R; Chretien JP; Peltier RE; Chew GL; Blount BC, 2016. Exposure science in an age of rapidly changing climate: challenges and opportunities.  J Expo Sci Environ Epidemiol 26(6):529-538

Gillette EI; Kim N; Rubloff GW; Lee SB, 2016. Interconnected mesoporous V2O5 electrode: impact on lithium ion insertion rate.  Phys Chem Chem Phys 18(44):30605-30611

Samanta SK; Moncelet D; Briken V; Isaacs L, 2016. Metal-Organic Polyhedron Capped with Cucurbit[8]uril Delivers Doxorubicin to Cancer Cells.  J Am Chem Soc 138(43):14488-14496

Kłos J; Hapka M; Chałasiński G; Halvick P; Stoecklin T, 2016. Theoretical study of the buffer-gas cooling and trapping of CrH(X6Σ+) by 3He atoms.  J Chem Phys 145(21):214305

Hauk P; Stephens K; Mckay R; Virgile CR; Ueda H; Ostermeier M; Ryu KS; Sintim HO; Bentley WE, 2016. Insightful directed evolution of Escherichia coli quorum sensing promoter region of the lsrACDBFG operon: a tool for synthetic biology systems and protein expression.  Nucleic Acids Res 44(21):10515-10525

Zhou X; Wilfong B; Vivanco H; Paglione J; Brown CM; Rodriguez EE, 2016. Metastable Layered Cobalt Chalcogenides from Topochemical Deintercalation.  J Am Chem Soc 138(50):16432-16442

Lee AE; Geis-Asteggiante L; Dixon EK; Miller M; Wang Y; Fushman D; Fenselau C, 2016. Preparing to read the ubiquitin code: top-down analysis of unanchored ubiquitin tetramers.  J Mass Spectrom 51(8):629-637

Bockus AT; Smith LC; Grice AG; Ali OA; Young CC; Mobley W; Leek A; Roberts JL; Vinciguerra B; Isaacs L; Urbach AR, 2016. Cucurbit[7]uril-Tetramethylrhodamine Conjugate for Direct Sensing and Cellular Imaging.  J Am Chem Soc 138(50):16549-16552

Zhang B; Zheng W; Papoian GA; Wolynes PG, 2016. Exploring the Free Energy Landscape of Nucleosomes.  J Am Chem Soc 138(26):8126-33

Webber MJ; Appel EA; Vinciguerra B; Cortinas AB; Thapa LS; Jhunjhunwala S; Isaacs L; Langer R; Anderson DG, 2016. Supramolecular PEGylation of biopharmaceuticals.  Proc Natl Acad Sci U S A 113(50):14189-14194

Dagdigian PJ; Kłos J; Warehime M; Alexander MH, 2016. Accurate transport properties for O(3P)-H and O(3P)-H2.  J Chem Phys 145(16):164309

Chojnacki M; Zhang D; Talarowska M; Gałecki P; Szemraj J; Fushman D; Nakasone MA, 2016. Characterizing polyubiquitinated forms of the neurodegenerative ubiquitin mutant UBB+1.  FEBS Lett 590(24):4573-4585

Gong W; Yang X; Zavalij PY; Isaacs L; Zhao Z; Liu S, 2016. From Packed "Sandwich" to "Russian Doll": Assembly by Charge-Transfer Interactions in Cucurbit[10]uril.  Chemistry 22(49):17612-17618

Liu Y; Yang X; Huang Z; Huang P; Zhang Y; Deng L; Wang Z; Zhou Z; Liu Y; Kalish H; Khachab NM; Chen X; Nie Z, 2016. Magneto-Plasmonic Janus Vesicles for Magnetic Field-Enhanced Photoacoustic and Magnetic Resonance Imaging of Tumors.  Angew Chem Int Ed Engl 55(49):15297-15300

Subramanian S; Gerasopoulos K; Guo M; Sintim HO; Bentley WE; Ghodssi R, 2016. Autoinducer-2 analogs and electric fields - an antibiotic-free bacterial biofilm combination treatment.  Biomed Microdevices 18(5):95

Murray MJ; Ogden HM; Toro C; Liu Q; Mullin AS, 2016. Impulsive Collision Dynamics of CO Super Rotors from an Optical Centrifuge.  Chemphyschem 17(22):3692-3700

Joalland B; Jamal-Eddine N; Kłos J; Lique F; Trolez Y; Guillemin JC; Carles S; Biennier L, 2016. Low-Temperature Reactivity of C2n+1N(-) Anions with Polar Molecules.  J Phys Chem Lett 7(15):2957-61

Toonstra C; Amin MN; Wang LX, 2016. Site-Selective Chemoenzymatic Glycosylation of an HIV-1 Polypeptide Antigen with Two Distinct N-Glycans via an Orthogonal Protecting Group Strategy.  J Org Chem 81(15):6176-85

Li Y; Mathews RA, 2016. In vivo real-time monitoring of aphrodisiac pheromone release of small white cabbage butterflies (Pieris rapae).  J Insect Physiol 91-92:107-12

Gao T; Li X; Wang X; Hu J; Han F; Fan X; Suo L; Pearse AJ; Lee SB; Rubloff GW; Gaskell KJ; Noked M; Wang C, 2016. A Rechargeable Al/S Battery with an Ionic-Liquid Electrolyte.  Angew Chem Int Ed Engl 55(34):9898-901

Huang Z; Liu Y; Zhang Q; Chang X; Li A; Deng L; Yi C; Yang Y; Khashab NM; Gong J; Nie Z, 2016. Collapsed polymer-directed synthesis of multicomponent coaxial-like nanostructures.  Nat Commun 7:12147

Zhang Y; Blough NV, 2016. Photoproduction of One-Electron Reducing Intermediates by Chromophoric Dissolved Organic Matter (CDOM): Relation to O2- and H2O2 Photoproduction and CDOM Photooxidation.  Environ Sci Technol.

Yunger Halpern N; Jarzynski C, 2016. Number of trials required to estimate a free-energy difference, using fluctuation relations.  Phys Rev E 93(5):052144

Li W; Bockus AT; Vinciguerra B; Isaacs L; Urbach AR, 2016. Predictive recognition of native proteins by cucurbit[7]uril in a complex mixture.  Chem Commun (Camb) 52(55):8537-40

You R; Radney JG; Zachariah MR; Zangmeister CD, 2016. Measured Wavelength-Dependent Absorption Enhancement of Internally Mixed Black Carbon with Absorbing and Nonabsorbing Materials.  Environ Sci Technol 50(15):7982-90

Hu J; Sun CF; Gillette E; Gui Z; Wang Y; Lee SB, 2016. Dual-template ordered mesoporous carbon/Fe2O3 nanowires as lithium-ion battery anodes.  Nanoscale 8(26):12958-69

Gallo P; Amann-Winkel K; Angell CA; Anisimov MA; Caupin F; Chakravarty C; Lascaris E; Loerting T; Panagiotopoulos AZ; Russo J; Sellberg JA; Stanley HE; Tanaka H; Vega C; Xu L; Pettersson LG, 2016. Water: A Tale of Two Liquids.  Chem Rev 116(13):7463-500

Saha S; Rokita SE, 2016. An Activator of an Adenylation Domain Revealed by Activity but Not Sequence Homology.  Chembiochem 17(19):1818-1823

Stock C; Rodriguez EE; Lee N; Green MA; Demmel F; Ewings RA; Fouquet P; Laver M; Niedermayer Ch; Su Y; Nemkovski K; Rodriguez-Rivera JA; Cheong SW, 2016. Solitary Magnons in the S=5/2 Antiferromagnet CaFe_{2}O_{4}.  Phys Rev Lett 117(1):017201

Sutyak KB; Zavalij PY; Robinson ML; Davis JT, 2016. Controlling molecularity and stability of hydrogen bonded G-quadruplexes by modulating the structure's periphery.  Chem Commun (Camb) 52(74):11112-5

Liu L; Taylor DD; Rodriguez EE; Zachariah MR, 2016. Influence of transition metal electronegativity on the oxygen storage capacity of perovskite oxides.  Chem Commun (Camb) 52(68):10369-72

McPhie P; Brown P; Chen B; Dayie TK; Minton AP, 2016. Modulation of Conformational Equilibria in the S-Adenosylmethionine (SAM) II Riboswitch by SAM, Mg(2+), and Trimethylamine N-Oxide.  Biochemistry 55(36):5010-20

Demarest TG; Waite EL; Kristian T; Puche AC; Waddell J; McKenna MC; Fiskum G, 2016. Sex-dependent mitophagy and neuronal death following rat neonatal hypoxia-ischemia.  Neuroscience 335:103-13

Powell LR; Piao Y; Wang Y, 2016. Optical Excitation of Carbon Nanotubes Drives Localized Diazonium Reactions.  J Phys Chem Lett 7(18):3690-4

Sun CF; Hu J; Wang P; Cheng XY; Lee SB; Wang Y, 2016. Li3PO4 Matrix Enables a Long Cycle Life and High Energy Efficiency Bismuth-Based Battery.  Nano Lett 16(9):5875-82

Hartmann NF; Velizhanin KA; Haroz EH; Kim M; Ma X; Wang Y; Htoon H; Doorn SK, 2016. Photoluminescence Dynamics of Aryl sp(3) Defect States in Single-Walled Carbon Nanotubes.  ACS Nano 10(9):8355-65

She N; Moncelet D; Gilberg L; Lu X; Sindelar V; Briken V; Isaacs L, 2016. Glycoluril-Derived Molecular Clips are Potent and Selective Receptors for Cationic Dyes in Water.  Chemistry 22(43):15270-15279

Yamaguchi T; Amin MN; Toonstra C; Wang LX, 2016. Chemoenzymatic Synthesis and Receptor Binding of Mannose-6-Phosphate (M6P)-Containing Glycoprotein Ligands Reveal Unusual Structural Requirements for M6P Receptor Recognition.  J Am Chem Soc 138(38):12472-85

Chen Y; Egan GC; Wan J; Zhu S; Jacob RJ; Zhou W; Dai J; Wang Y; Danner VA; Yao Y; Fu K; Wang Y; Bao W; Li T; Zachariah MR; Hu L, 2016. Ultra-fast self-assembly and stabilization of reactive nanoparticles in reduced graphene oxide films.  Nat Commun 7:12332

Bernstein PS; Khachik F; Frank HA, 2015. Highlights of carotenoid research from the 17th International Carotenoid Symposium.  Arch Biochem Biophys 572:1

Eginton C; Cressman WJ; Bachas S; Wade H; Beckett D, 2015. Allosteric coupling via distant disorder-to-order transitions.  J Mol Biol 427(8):1695-704

Ropp C; Cummins Z; Nah S; Fourkas JT; Shapiro B; Waks E, 2015. Nanoscale probing of image-dipole interactions in a metallic nanostructure.  Nat Commun 6:6558

Jiang K; Lu AX; Dimitrakopoulos P; DeVoe DL; Raghavan SR, 2015. Microfluidic generation of uniform water droplets using gas as the continuous phase.  J Colloid Interface Sci 448:275-9

Wang D; Tang J; Tang J; Wang LX, 2015. Targeting N-glycan cryptic sugar moieties for broad-spectrum virus neutralization: progress in identifying conserved molecular targets in viruses of distinct phylogenetic origins.  Molecules 20(3):4610-22

Matta JT; Garg U; Li W; Frauendorf S; Ayangeakaa AD; Patel D; Schlax KW; Palit R; Saha S; Sethi J; Trivedi T; Ghugre SS; Raut R; Sinha AK; Janssens RV; Zhu S; Carpenter MP; Lauritsen T; Seweryniak D; Chiara CJ; Kondev FG; Hartley DJ; Petrache CM; Mukhopadhyay S; Lakshmi DV; Raju MK; Madhusudhana Rao PV; Tandel SK; Ray S; Dönau F, 2015. Transverse wobbling in ^{135}pr.  Phys Rev Lett 114(8):082501

Fenselau CC, 2015. Carl Djerassi (1923-2015): an obituary for chemists.  J Am Soc Mass Spectrom 26(4):535-7

Jin W; Liu Q; Dougherty DB; Cullen WG; Reutt-Robey JE; Weeks J; Robey SW, 2015. C60 chain phases on ZnPc/Ag(111) surfaces: Supramolecular organization driven by competing interactions.  J Chem Phys 142(10):101910

Zargar A; Quan DN; Carter KK; Guo M; Sintim HO; Payne GF; Bentley WE, 2015. Bacterial secretions of nonpathogenic Escherichia coli elicit inflammatory pathways: a closer investigation of interkingdom signaling.  MBio 6(2):e00025

Wang L; Liu Y; He J; Hourwitz MJ; Yang Y; Fourkas JT; Han X; Nie Z, 2015. Continuous Microfluidic Self-Assembly of Hybrid Janus-Like Vesicular Motors: Autonomous Propulsion and Controlled Release.  Small 11(31):3762-7

Han F; Gao T; Zhu Y; Gaskell KJ; Wang C, 2015. A Battery Made from a Single Material.  Adv Mater 27(23):3473-83

Robinson EL; Zavalij PY; Isaacs L, 2015. Synthesis of a Disulfonated Derivative of Cucurbit[7]uril and Investigations of its Ability to Solubilize Insoluble Drugs.  Supramol Chem 27(5-6):288-297

Farrell WS; Zavalij PY; Sita LR, 2015. Metal-catalyzed "on-demand" production of carbonyl sulfide from carbon monoxide and elemental sulfur.  Angew Chem Int Ed Engl 54(14):4269-73

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Wang J; Luo C; Gao T; Langrock A; Mignerey AC; Wang C, 2015. An advanced MoS2 /carbon anode for high-performance sodium-ion batteries.  Small 11(4):473-81

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Liu Y; Deng Y; Zavalij PY; Liu R; Doyle MP, 2015. An efficient route to highly enantioenriched tetrahydroazulenes and β-tetralones by desymmetrization reactions of δ,δ-diaryldiazoaceto-acetates.  Chem Commun (Camb) 51(3):565-8

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Echeverria I; Papoian GA, 2015. DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates.  PLoS Comput Biol 11(2):e1003980

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Guo M; Zheng Y; Terell JL; Ad M; Opoku-Temeng C; Bentley WE; Sintim HO, 2015. Geminal dihalogen isosteric replacement in hydrated AI-2 affords potent quorum sensing modulators.  Chem Commun (Camb) 51(13):2617-20

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Liu Y; He J; Yang K; Yi C; Liu Y; Nie L; Khashab NM; Chen X; Nie Z, 2015. Folding Up of Gold Nanoparticle Strings into Plasmonic Vesicles for Enhanced Photoacoustic Imaging.  Angew Chem Int Ed Engl 54(52):15809-12

Demers J; Jarzynski C, 2015. Universal energy diffusion in a quivering billiard.  Phys Rev E Stat Nonlin Soft Matter Phys 92(4):042911

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Vinciguerra B; Zavalij PY; Isaacs L, 2015. Synthesis and Recognition Properties of Cucurbit[8]uril Derivatives.  Org Lett 17(20):5068-71

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Keane AJ; Farrell WS; Yonke BL; Zavalij PY; Sita LR, 2015. Metal-Mediated Production of Isocyanates, R3 EN=C=O from Dinitrogen, Carbon Dioxide, and R3 ECl.  Angew Chem Int Ed Engl 54(35):10220-4

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Yu Z; Livnat-Levanon N; Kleifeld O; Mansour W; Nakasone MA; Castaneda CA; Dixon EK; Fushman D; Reis N; Pick E; Glickman MH, 2015. Base-CP proteasome can serve as a platform for stepwise lid formation.  Biosci Rep 35.

Deng L; Li Q; Yang Y; Omar H; Tang N; Zhang J; Nie Z; Khashab NM, 2015. "Two-Step" Raman Imaging Technique To Guide Chemo-Photothermal Cancer Therapy.  Chemistry 21(48):17274-81

Dagdigian PJ; Alexander MH; Kłos J, 2015. Theoretical investigation of the dynamics of O((1)D→(3)P) electronic quenching by collision with Xe.  J Chem Phys 143(5):054306

Deng Y; Jing C; Zavalij PY; Doyle MP, 2015. Hg(OTf)2 Catalyzed Intramolecular 1,4-Addition of Donor-Acceptor Cyclopropenes to Arenes.  Org Lett 17(17):4312-5

Zhang M; Sigwalt D; Isaacs L, 2015. Differentially functionalized acyclic cucurbiturils: synthesis, self-assembly and CB[6]-induced allosteric guest binding.  Chem Commun (Camb) 51(78):14620-3

Shah S; Cannon JR; Fenselau C; Briken V, 2015. A Duplicated ESAT-6 Region of ESX-5 Is Involved in Protein Export and Virulence of Mycobacteria.  Infect Immun 83(11):4349-61

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Shi D; Allewell NM; Tuchman M, 2015. From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases.  Int J Mol Sci 16(8):18836-64

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Brozena AH; Leeds JD; Zhang Y; Fourkas JT; Wang Y, 2014. Controlled defects in semiconducting carbon nanotubes promote efficient generation and luminescence of trions.  ACS Nano 8(5):4239-47

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Truong PM; Zavalij PY; Doyle MP, 2014. Highly enantioselective carbonyl-ene reactions of 2,3-diketoesters: efficient and atom-economical process to functionalized chiral α-hydroxy-β-ketoesters.  Angew Chem Int Ed Engl 53(25):6468-72

Sberegaeva AV; Liu WG; Nielsen RJ; Goddard WA 3rd; Vedernikov AN, 2014. Mechanistic study of the oxidation of a methyl platinum(II) complex with O(2) in water: Pt(II)Me-to-Pt(IV)Me and Pt(II)Me-to-Pt(IV)Me(2) reactivity.  J Am Chem Soc 136(12):4761-8

Fenselau C, 2014. From genes to function: kick-starting US HUPO.  J Proteomics 107:144-5

Roembke BT; Zhou J; Zheng Y; Sayre D; Lizardo A; Bernard L; Sintim HO, 2014. A cyclic dinucleotide containing 2-aminopurine is a general fluorescent sensor for c-di-GMP and 3',3'-cGAMP.  Mol Biosyst 10(6):1568-75

Yan L; Zhou J; Zheng Y; Gamson AS; Roembke BT; Nakayama S; Sintim HO, 2014. Isothermal amplified detection of DNA and RNA.  Mol Biosyst 10(5):970-1003

Xu X; Doyle MP, 2014. The [3 + 3]-cycloaddition alternative for heterocycle syntheses: catalytically generated metalloenolcarbenes as dipolar adducts.  Acc Chem Res 47(4):1396-405

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Yu Y; Mao B; Geller A; Chang R; Gaskell K; Liu Z; Eichhorn BW, 2014. CO2 activation and carbonate intermediates: an operando AP-XPS study of CO2 electrolysis reactions on solid oxide electrochemical cells.  Phys Chem Chem Phys 16(23):11633-9

Gui Z; Duay J; Hu J; Lee SB, 2014. Redox-exchange induced heterogeneous RuO2-conductive polymer nanowires.  Phys Chem Chem Phys 16(24):12332-40

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Isaacs L, 2014. Stimuli responsive systems constructed using cucurbit[n]uril-type molecular containers.  Acc Chem Res 47(7):2052-62

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Denning DM; Falvey DE, 2014. Solvent-dependent decarboxylation of 1,3-dimethylimdazolium-2-carboxylate.  J Org Chem 79(10):4293-9

Zhuravlev PI; Reddy G; Straub JE; Thirumalai D, 2014. Propensity to form amyloid fibrils is encoded as excitations in the free energy landscape of monomeric proteins.  J Mol Biol 426(14):2653-66

Singh RK; Sundar A; Fushman D, 2014. Nonenzymatic rubylation and ubiquitination of proteins for structural and functional studies.  Angew Chem Int Ed Engl 53(24):6120-5

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Lin JC; Hyeon C; Thirumalai D, 2014. Sequence-dependent folding landscapes of adenine riboswitch aptamers.  Phys Chem Chem Phys 16(14):6376-82

Cao L; Śekutor M; Zavalij PY; Mlinarić-Majerski K; Glaser R; Isaacs L, 2014. Cucurbit[7]uril⋅guest pair with an attomolar dissociation constant.  Angew Chem Int Ed Engl 53(4):988-93

Campbell NP; Rokita SE, 2014. Electron transport in DNA initiated by diaminonaphthalene donors alternatively bound by non-covalent and covalent association.  Org Biomol Chem 12(7):1143-8

Song J; Duay J; Gillette E; Lee SB, 2014. The reversible anomalous high lithium capacity of MnO₂ nanowires.  Chem Commun (Camb) 50(55):7352-5

Burke M; Choksawangkarn W; Edwards N; Ostrand-Rosenberg S; Fenselau C, 2014. Exosomes from myeloid-derived suppressor cells carry biologically active proteins.  J Proteome Res 13(2):836-43

Helz GR; Erickson BE; Vorlicek TP, 2014. Stabilities of thiomolybdate complexes of iron; implications for retention of essential trace elements (Fe, Cu, Mo) in sulfidic waters.  Metallomics 6(6):1131-40

Graham LM; Cho S; Kim SK; Noked M; Lee SB, 2014. Role of boric acid in nickel nanotube electrodeposition: a surface-directed growth mechanism.  Chem Commun (Camb) 50(5):527-9

Pal S; Zavalij PY; Vedernikov AN, 2014. Oxidative C(sp3)-H bond cleavage, C-C and C=C coupling at a boron center with O2 as the oxidant mediated by platinum(II).  Chem Commun (Camb) 50(40):5376-8

Tugarinov V, 2014. Indirect use of deuterium in solution NMR studies of protein structure and hydrogen bonding.  Prog Nucl Magn Reson Spectrosc 77:49-68

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Chadwick H; Brouard M; Chang YP; Eyles CJ; McCrudden G; Perkins T; Seamons SA; Kłos J; Alexander MH; Dagdigian PJ; Herráez-Aguilar D; Aoiz FJ, 2014. The collisional depolarization of OH(A (2)Σ(+)) and NO(A (2)Σ(+)) with Kr.  J Chem Phys 140(5):054306

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Zhou J; Sayre DA; Zheng Y; Szmacinski H; Sintim HO, 2014. Unexpected complex formation between coralyne and cyclic diadenosine monophosphate providing a simple fluorescent turn-on assay to detect this bacterial second messenger.  Anal Chem 86(5):2412-20

Liu Y; Li Y; He J; Duelge KJ; Lu Z; Nie Z, 2014. Entropy-driven pattern formation of hybrid vesicular assemblies made from molecular and nanoparticle amphiphiles.  J Am Chem Soc 136(6):2602-10

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Xu X; Leszczynski JS; Mason SM; Zavalij PY; Doyle MP, 2014. Expedient access to substituted 3-amino-2-cyclopentenones by dirhodium-catalyzed [3+2]-annulation of silylated ketene imines and enoldiazoacetates.  Chem Commun (Camb) 50(19):2462-4

Zhang B; Zavalij PY; Isaacs L, 2014. Acyclic CB[n]-type molecular containers: effect of solubilizing group on their function as solubilizing excipients.  Org Biomol Chem 12(15):2413-22

Davis JT, 2014. Ion transport: Tipping a cell's ionic balance.  Nat Chem 6(10):852-3

Zhang B; Isaacs L, 2014. Acyclic cucurbit[n]uril-type molecular containers: influence of aromatic walls on their function as solubilizing excipients for insoluble drugs.  J Med Chem 57(22):9554-63

Zheng Y; Sintim HO, 2014. Molecular insights into how ligands activate or inactivate LasR.  Chem Biol 21(10):1261-1263

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Zhang M; Cao L; Isaacs L, 2014. Cucurbit[6]uril-cucurbit[7]uril heterodimer promotes controlled self-assembly of supramolecular networks and supramolecular micelles by self-sorting of amphiphilic guests.  Chem Commun (Camb) 50(94):14756-9

Wei Z; Jia Z; Athas J; Wang C; Raghavan SR; Li T; Nie Z, 2014. Hybrid hydrogel sheets that undergo pre-programmed shape transformations.  Soft Matter 10(41):8157-62

Burke MC; Oei MS; Edwards NJ; Ostrand-Rosenberg S; Fenselau C, 2014. Ubiquitinated proteins in exosomes secreted by myeloid-derived suppressor cells.  J Proteome Res 13(12):5965-72

Zhang Y; Simon KA; Andrew AA; Del Vecchio R; Blough NV, 2014. Enhanced photoproduction of hydrogen peroxide by humic substances in the presence of phenol electron donors.  Environ Sci Technol 48(21):12679-88

Liu C; Gillette EI; Chen X; Pearse AJ; Kozen AC; Schroeder MA; Gregorczyk KE; Lee SB; Rubloff GW, 2014. An all-in-one nanopore battery array.  Nat Nanotechnol 9(12):1031-9

Oun R; Floriano RS; Isaacs L; Rowan EG; Wheate NJ, 2014. The ex vivo neurotoxic, myotoxic and cardiotoxic activity of cucurbituril-based macrocyclic drug delivery vehicles.  Toxicol Res (Camb) 3(6):447-455

Strasberg P; Schaller G; Brandes T; Jarzynski C, 2014. Second laws for an information driven current through a spin valve.  Phys Rev E Stat Nonlin Soft Matter Phys 90(6):062107

Gong Z; Deffner S; Quan HT, 2014. Interference of identical particles and the quantum work distribution.  Phys Rev E Stat Nonlin Soft Matter Phys 90(6):062121

Li QL; Sun Y; Sun YL; Wen J; Zhou Y; Bing QM; Isaacs LD; Jin Y; Gao H; Yang YW, 2014. Mesoporous Silica Nanoparticles Coated by Layer-by-Layer Self-assembly Using Cucurbit[7]uril for in Vitro and in Vivo Anticancer Drug Release.  Chem Mater 26(22):6418-6431

Ma L; Dagdigian PJ; Alexander MH, 2014. Theoretical investigation of the relaxation of the bending mode of CH₂(X̃) by collisions with helium.  J Chem Phys 141(21):214305

Lee AE; Castañeda CA; Wang Y; Fushman D; Fenselau C, 2014. Preparing to read the ubiquitin code: a middle-out strategy for characterization of all lysine-linked diubiquitins.  J Mass Spectrom 49(12):1272-8

Luo Y; Sintim HO; Dayie TK, 2014. Synthesis of a biotinylated photocleavable nucleotide monophosphate for the preparation of natively folded RNAs.  Methods Enzymol 549:115-31

Alvarado LJ; Longhini AP; LeBlanc RM; Chen B; Kreutz C; Dayie TK, 2014. Chemo-enzymatic synthesis of selectively ¹³C/¹⁵N-labeled RNA for NMR structural and dynamics studies.  Methods Enzymol 549:133-62

Patel DK; Gebbie MP; Lee VT, 2014. Assessing RNA interactions with proteins by DRaCALA.  Methods Enzymol 549:489-512

Kumi BC; Hammouda B; Greer SC, 2014. Self-assembly of the triblock copolymer 17R4 poly(propylene oxide)₁₄-poly(ethylene oxide)₂₄-poly(propylene oxide)₁₄ in D₂O.  J Colloid Interface Sci 434:201-7

Liu Y; Wu H; Li M; Yin JJ; Nie Z, 2014. pH dependent catalytic activities of platinum nanoparticles with respect to the decomposition of hydrogen peroxide and scavenging of superoxide and singlet oxygen.  Nanoscale 6(20):11904-10

Bonança MV; Deffner S, 2014. Optimal driving of isothermal processes close to equilibrium.  J Chem Phys 140(24):244119

Naganathan AN; Muñoz V, 2014. Thermodynamics of downhill folding: multi-probe analysis of PDD, a protein that folds over a marginal free energy barrier.  J Phys Chem B 118(30):8982-94

Krutauz D; Reis N; Nakasone MA; Siman P; Zhang D; Kirkpatrick DS; Gygi SP; Brik A; Fushman D; Glickman MH, 2014. Extended ubiquitin species are protein-based DUB inhibitors.  Nat Chem Biol 10(8):664-70

Keane AJ; Yonke BL; Hirotsu M; Zavalij PY; Sita LR, 2014. Fine-tuning the energy barrier for metal-mediated dinitrogen N≡N bond cleavage.  J Am Chem Soc 136(28):9906-9

Alvarado LJ; LeBlanc RM; Longhini AP; Keane SC; Jain N; Yildiz ZF; Tolbert BS; D'Souza VM; Summers MF; Kreutz C; Dayie TK, 2014. Regio-selective chemical-enzymatic synthesis of pyrimidine nucleotides facilitates RNA structure and dynamics studies.  Chembiochem 15(11):1573-7

Kao JP; Muralidharan S; Zavalij PY; Fletcher S; Xue F; Rosen GM, 2014. Baeyer-Villiger Rearrangement of a Substituted Pyrrole by Oxone.  Tetrahedron Lett 55(19):3111-3113

Liu Y; Liu Y; Shanahan CS; Xu X; Doyle MP, 2014. A survey of enoldiazo nucleophilicity in selective C-C bond forming reactions for the synthesis of natural product-like frameworks.  Org Biomol Chem 12(28):5227-34

Ferreira-Cerca S; Kiburu I; Thomson E; LaRonde N; Hurt E, 2014. Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes.  Nucleic Acids Res 42(13):8635-47

Ford Siltz LA; Viktorova EG; Zhang B; Kouiavskaia D; Dragunsky E; Chumakov K; Isaacs L; Belov GA, 2014. New small-molecule inhibitors effectively blocking picornavirus replication.  J Virol 88(19):11091-107

Warehime M; Alexander MH, 2014. A MATLAB-based finite-element visualization of quantum reactive scattering. I. Collinear atom-diatom reactions.  J Chem Phys 141(2):024118

Ma L; Alexander MH; Dagdigian PJ, 2014. Theoretical investigation of intersystem crossing between the ã¹A₁ and X³B₁ states of CH₂ induced by collisions with helium.  J Chem Phys 141(6):064312

Fei X; Ye X; LaRonde NA; Lorimer GH, 2014. Formation and structures of GroEL:GroES2 chaperonin footballs, the protein-folding functional form.  Proc Natl Acad Sci U S A 111(35):12775-80

Peters GM; Skala LP; Plank TN; Hyman BJ; Manjunatha Reddy GN; Marsh A; Brown SP; Davis JT, 2014. A G₄·K⁺ hydrogel stabilized by an anion.  J Am Chem Soc 136(36):12596-9

Zheng Y; Zhou J; Sayre DA; Sintim HO, 2014. Identification of bromophenol thiohydantoin as an inhibitor of DisA, a c-di-AMP synthase, from a 1000 compound library, using the coralyne assay.  Chem Commun (Camb) 50(76):11234-7

Zhou J; Le V; Kalia D; Nakayama S; Mikek C; Lewis EA; Sintim HO, 2014. Diminazene or berenil, a classic duplex minor groove binder, binds to G-quadruplexes with low nanomolar dissociation constants and the amidine groups are also critical for G-quadruplex binding.  Mol Biosyst 10(10):2724-34

Kahn JD, 2014. DNA, flexibly flexible.  Biophys J 107(2):282-284

Xu X; Wang X; Liu Y; Doyle MP, 2014. Enantioselective carbonyl-ene reactions catalyzed by chiral cationic dirhodium(II,III) carboxamidates.  J Org Chem 79(24):12185-90

McCrane MP; Hutchinson MA; Ad O; Rokita SE, 2014. Oxidative quenching of quinone methide adducts reveals transient products of reversible alkylation in duplex DNA.  Chem Res Toxicol 27(7):1282-93

Publication list retrieved from NCBI using ImpactPubs

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